Transcript: ENST00000319562.6 FARP1-001

Description

FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) [Source:HGNC Symbol;Acc:3591]

Gene Synonyms

CDEP, FARP1-IT1, MGC87400, PLEKHC2, PPP1R75

Location

Chromosome 13: 98,795,505-99,102,023 forward strand.

About this transcript

This transcript has 27 exons, is annotated with 43 domains and features, is associated with 143368 variant alleles and maps to 838 oligo probes.

Gene

This transcript is a product of gene ENSG00000152767.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000376586.2	FARP1-201	5012	1076aa	ENSP00000365771.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS66572	C9JME2 M0QYB0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000595437.1	FARP1-011	4926	1076aa	ENSP00000471242.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS66572	C9JME2 M0QYB0	NM_001286839.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000319562.6	FARP1-001	4855	1045aa	ENSP00000322926.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9487	M0QYB0 Q9Y4F1	NM_005766.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000376581.5	FARP1-006	1021	129aa	ENSP00000365765.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32000	Q9Y4F1	NM_001001715.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000423063.2	FARP1-005	764	215aa	ENSP00000410930.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y783	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000598389.1	FARP1-039	747	203aa	ENSP00000469712.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QYB0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000596256.1	FARP1-013	744	248aa	ENSP00000469365.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000601009.1	FARP1-038	667	171aa	ENSP00000472346.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000599040.1	FARP1-016	555	10aa	ENSP00000469420.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000593990.1	FARP1-036	871	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000602263.1	FARP1-041	867	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000596613.1	FARP1-027	856	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000600032.1	FARP1-028	810	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000601656.1	FARP1-020	806	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000598698.1	FARP1-023	786	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000602272.1	FARP1-024	784	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000596545.1	FARP1-031	781	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000595817.1	FARP1-040	778	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000594657.1	FARP1-037	767	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000593548.1	FARP1-042	764	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000598346.1	FARP1-026	756	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000601853.1	FARP1-032	749	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000457431.1	FARP1-008	748	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000595366.1	FARP1-029	709	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000599151.1	FARP1-022	641	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000595380.1	FARP1-033	616	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000601133.1	FARP1-035	612	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000457029.3	FARP1-003	602	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000601762.1	FARP1-030	583	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000602015.1	FARP1-021	576	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000427404.1	FARP1-009	558	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000602171.1	FARP1-025	518	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000600380.1	FARP1-015	510	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000601361.1	FARP1-007	457	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000597596.1	FARP1-014	439	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000600648.1	FARP1-010	433	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000596580.1	FARP1-017	8209	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000597777.1	FARP1-018	3841	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000594346.1	FARP1-019	2692	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000596467.1	FARP1-034	799	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000490389.1	FARP1-002	604	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000600190.1	FARP1-012	566	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 27, Coding exons: 26, Transcript length: 4,855 bps, Translation length: 1,045 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y4F1

CCDS

This transcript is a member of the Human CCDS set: CCDS9487

Version

ENST00000319562.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000045541 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000319562.6 FARP1-001

Summary