Transcript: ENST00000418179.1 CENPJ-002

Description

centromere protein J [Source:HGNC Symbol;Acc:17272]

Gene Synonyms

BM032, CENP-J, CPAP, LAP, LIP1, MCPH6, SASS4, SCKL4, Sas-4

Location

About this transcript

This transcript has 4 exons, is annotated with 5 domains and features, is associated with 6406 variant alleles and maps to 178 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000381884.4	CENPJ-001	4347	1338aa	ENSP00000371308.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9310	B3KVU9 Q9HC77	NM_018451.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545981.1	CENPJ-201	4211	1086aa	ENSP00000441090.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JPD5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000418179.1	CENPJ-002	691	196aa	ENSP00000399334.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000493190.1	CENPJ-003	571	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471870.1	CENPJ-004	501	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 691 bps, Translation length: 196 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000418179.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000044210 (version 1)