Transcript: ENST00000534548.2 NCAPD3-001

Description

non-SMC condensin II complex, subunit D3 [Source:HGNC Symbol;Acc:28952]

Gene Synonyms

CAP-D3, CAPD3, FLJ42888, KIAA0056, hCAP-D3, hHCP-6, hcp-6

Location

Chromosome 11: 134,022,340-134,093,885 reverse strand.

About this transcript

This transcript has 35 exons, is annotated with 18 domains and features, is associated with 40683 variant alleles and maps to 810 oligo probes.

Gene

This transcript is a product of gene ENSG00000151503.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000534548.2	NCAPD3-001	5061	1498aa	ENSP00000433681.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31723	E9PL84 E9PLE0 P42695 Q96FA6	NM_015261.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000530396.1	NCAPD3-012	1521	264aa	ENSP00000435173.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PLE0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000526422.1	NCAPD3-006	1055	37aa	ENSP00000435586.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PJ63 E9PJM8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527944.1	NCAPD3-013	773	194aa	ENSP00000432532.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PQA3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000525485.1	NCAPD3-008	555	74aa	ENSP00000436037.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PL84 E9PR72	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000534227.1	NCAPD3-005	537	35aa	ENSP00000431436.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PL84	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000532445.1	NCAPD3-007	532	33aa	ENSP00000435655.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PJ63	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000534532.2	NCAPD3-002	5531	1084aa	ENSP00000434168.2	Nonsense mediated decay		E9PL84 G3V1A9	-	-
ENST00000525964.2	NCAPD3-003	5025	832aa	ENSP00000431612.2	Nonsense mediated decay		E9PKK4 E9PL84	-	-
ENST00000533155.1	NCAPD3-009	727	75aa	ENSP00000431413.1	Nonsense mediated decay		E9PL84 E9PL95	-	-
ENST00000526787.2	NCAPD3-016	1226	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000528065.1	NCAPD3-010	557	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000534290.1	NCAPD3-011	352	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000525432.1	NCAPD3-015	343	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 35, Coding exons: 35, Transcript length: 5,061 bps, Translation length: 1,498 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P42695

CCDS

This transcript is a member of the Human CCDS set: CCDS31723

Version

ENST00000534548.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000393575 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000534548.2 NCAPD3-001

Summary