Transcript: ENST00000278550.7 TENM4-001

Description

teneurin transmembrane protein 4 [Source:HGNC Symbol;Acc:29945]

Gene Synonyms

Doc4, KIAA1302, ODZ4, TNM4, Ten-M4

Location

Chromosome 11: 78,363,876-79,151,695 reverse strand.

About this transcript

This transcript has 34 exons, is annotated with 56 domains and features, is associated with 338904 variant alleles and maps to 999 oligo probes.

Gene

This transcript is a product of gene ENSG00000149256.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000278550.7	TENM4-001	14000	2769aa	ENSP00000278550.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44688	G3CAT1 Q6N022	NM_001098816.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000530738.1	TENM4-003	3048	951aa	ENSP00000431711.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YCJ4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000533074.1	TENM4-010	524	157aa	ENSP00000432705.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PPG4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000533525.1	TENM4-011	453	151aa	ENSP00000432427.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000527736.1	TENM4-006	170	1aa	ENSP00000433535.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000533038.1	TENM4-007	863	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000531583.1	TENM4-004	748	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000529798.1	TENM4-008	690	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000533013.1	TENM4-009	587	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000528688.1	TENM4-005	474	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000532654.1	TENM4-002	984	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 34, Coding exons: 30, Transcript length: 14,000 bps, Translation length: 2,769 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6N022

CCDS

This transcript is a member of the Human CCDS set: CCDS44688

Version

ENST00000278550.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000391406 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000278550.7 TENM4-001

Summary