Transcript: ENST00000293880.5 SSRP1-002

Description

structure specific recognition protein 1 [Source:HGNC Symbol;Acc:11327]

Gene Synonyms

FACT, FACT80, T160

Location

About this transcript

This transcript has 11 exons, is associated with 4502 variant alleles and maps to 698 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000278412.2	SSRP1-001	2819	709aa	ENSP00000278412.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7952	E9PMD4 E9PPZ7 Q08945	NM_003146.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000526696.1	SSRP1-004	1007	192aa	ENSP00000431154.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PMD4 E9PPZ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000529002.1	SSRP1-003	844	154aa	ENSP00000434546.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PPZ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000293880.5	SSRP1-002	6296	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 0, Transcript length: 6,296 bps,

Version

ENST00000293880.5

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000392461 (version 1)