Transcript: ENST00000372117.3 CDHR1-001

Description

cadherin-related family member 1 [Source:HGNC Symbol;Acc:14550]

Gene Synonyms

CORD15, KIAA1775, PCDH21, PRCAD, RP65

Location

About this transcript

This transcript has 17 exons, is annotated with 46 domains and features, is associated with 11319 variant alleles and maps to 636 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000372117.3	CDHR1-001	5428	859aa	ENSP00000361189.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7372	F1T0L2 Q96JP9	NM_033100.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000440770.2	CDHR1-201	4537	563aa	ENSP00000415980.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EN47	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000332904.3	CDHR1-002	2690	745aa	ENSP00000331063.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53548	Q96JP9	NM_001171971.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000459673.1	CDHR1-003	3757	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 5,428 bps, Translation length: 859 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96JP9

CCDS

This transcript is a member of the Human CCDS set: CCDS7372

Version

ENST00000372117.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000049111 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.