Transcript: ENST00000370818.3 GPC3-001

Description

glypican 3 [Source:HGNC Symbol;Acc:4451]

Gene Synonyms

DGSX, GTR2-2, MXR7, OCI-5, OCI5, SDYS, SGB, SGBS, SGBS1

Location

About this transcript

This transcript has 8 exons, is annotated with 7 domains and features, is associated with 119894 variant alleles and maps to 492 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000370818.3	GPC3-001	2568	580aa	ENSP00000359854.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14638	I6QTG3 P51654	NM_004484.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394299.2	GPC3-201	2379	603aa	ENSP00000377836.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55496	P51654	NM_001164617.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543339.1	GPC3-202	1581	526aa	ENSP00000444222.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55495	P51654	NM_001164619.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000406757.2	GPC3-002	836	256aa	ENSP00000385307.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 2,568 bps, Translation length: 580 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P51654

CCDS

This transcript is a member of the Human CCDS set: CCDS14638

Version

ENST00000370818.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000058356 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.