Transcript: ENST00000268099.9 SCAMP2-001

Description

secretory carrier membrane protein 2 [Source:HGNC Symbol;Acc:10564]

Location

Chromosome 15: 75,136,071-75,165,706 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 11 domains and features, is associated with 13504 variant alleles and maps to 527 oligo probes.

Gene

This transcript is a product of gene ENSG00000140497.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000566480.1	SCAMP2-003	2476	278aa	ENSP00000455377.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KU14 H3BMN2 H3BPL9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000268099.9	SCAMP2-001	2453	329aa	ENSP00000268099.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10271	H3BMN2 O15127	NM_005697.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000564529.1	SCAMP2-007	866	254aa	ENSP00000457564.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BUB6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000565345.1	SCAMP2-009	790	93aa	ENSP00000454464.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BMN2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000562363.1	SCAMP2-008	638	194aa	ENSP00000457890.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BV04	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000563663.1	SCAMP2-004	1787	57aa	ENSP00000455963.1	Nonsense mediated decay		H3BQW2	-	-
ENST00000569904.1	SCAMP2-012	858	236aa	ENSP00000454741.1	Nonsense mediated decay		H3BN93	-	-
ENST00000563829.1	SCAMP2-005	3162	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000569251.1	SCAMP2-013	867	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000567638.1	SCAMP2-010	678	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000566557.1	SCAMP2-011	585	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000569124.1	SCAMP2-006	538	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 2,453 bps, Translation length: 329 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O15127

CCDS

This transcript is a member of the Human CCDS set: CCDS10271

Version

ENST00000268099.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000286403 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000268099.9 SCAMP2-001

Summary