Transcript: ENST00000468516.1 FOXN4-005

Description

forkhead box N4 [Source:HGNC Symbol;Acc:21399]

Location

Chromosome 12: 109,715,784-109,724,528 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 11 domains and features, is associated with 4239 variant alleles and maps to 214 oligo probes.

Gene

This transcript is a product of gene ENSG00000139445.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000299162.5	FOXN4-001	3350	517aa	ENSP00000299162.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9126	Q96NZ1	NM_213596.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000355216.1	FOXN4-002	2958	337aa	ENSP00000347354.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96NZ1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000468516.1	FOXN4-005	1593	84aa	ENSP00000474754.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000423960.1	FOXN4-004	1219	218aa	ENSP00000408085.1	Nonsense mediated decay		Q96NZ1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 1,593 bps, Translation length: 84 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000468516.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs2075438, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HapMap-JPT, CSHL-HAPMAP:HAPMAP-CHD, CSHL-HAPMAP:HAPMAP-LWK, CSHL-HAPMAP:HAPMAP-MKK, CSHL-HAPMAP:HapMap-YRI, CSHL-HAPMAP:HapMap-HCB, CSHL-HAPMAP:HAPMAP-MEX, CSHL-HAPMAP:HAPMAP-GIH, CSHL-HAPMAP:HAPMAP-TSI, CSHL-HAPMAP:HAPMAP-CHB, CSHL-HAPMAP:HAPMAP-ASW, CSHL-HAPMAP:HapMap-CEU.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000328309 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000468516.1 FOXN4-005

Summary