Transcript: ENST00000551984.1 FGD4-014

Description

FYVE, RhoGEF and PH domain containing 4 [Source:HGNC Symbol;Acc:19125]

Gene Synonyms

CMT4H, FRABP, ZFYVE6, frabin

Location

Chromosome 12: 32,655,091-32,793,682 forward strand.

About this transcript

This transcript has 16 exons, is associated with 58504 variant alleles and maps to 575 oligo probes.

Gene

This transcript is a product of gene ENSG00000139132.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000427716.2	FGD4-001	8242	766aa	ENSP00000394487.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8727	F8W1R0 J3KSS3 Q96M96	NM_139241.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546442.1	FGD4-015	3503	673aa	ENSP00000446695.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W1R0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000534526.2	FGD4-013	2977	903aa	ENSP00000449273.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VWL3 F8W1R0 J3KSS3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000525053.1	FGD4-011	2925	878aa	ENSP00000433666.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PJX4 F8W1R0 J3KSS3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000531134.1	FGD4-010	2924	851aa	ENSP00000431323.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z493 F8W1R0 J3KSS3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000266482.3	FGD4-201	2679	471aa	ENSP00000266482.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3XA97	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000472289.1	FGD4-005	1629	207aa	ENSP00000434356.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PQT1 J3KSS3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381025.3	FGD4-202	958	280aa	ENSP00000370413.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96M96	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000583694.1	FGD4-017	580	30aa	ENSP00000462623.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSS3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000493087.1	FGD4-002	2987	235aa	ENSP00000437109.1	Nonsense mediated decay		E9PNX0 J3KSS3	-	-
ENST00000395740.1	FGD4-003	2691	235aa	ENSP00000379089.1	Nonsense mediated decay		E9PNX0 J3KSS3	-	-
ENST00000551984.1	FGD4-014	2435	40aa	ENSP00000449614.1	Nonsense mediated decay		F8VVF1 J3KSS3	-	-
ENST00000494977.1	FGD4-004	2349	65aa	ENSP00000434062.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000473513.1	FGD4-008	559	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000550091.1	FGD4-016	549	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497153.1	FGD4-007	537	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000479023.1	FGD4-009	535	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000494275.1	FGD4-006	1439	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 2, Transcript length: 2,435 bps, Translation length: 40 residues

Version

ENST00000551984.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000404120 (version 1)

Annotation Attributes

dotter confirmed [Definitions]

Favourite species

All species

Recent locations

Transcript: ENST00000551984.1 FGD4-014

Summary