Transcript: ENST00000260947.4 BARD1-001

Description

BRCA1 associated RING domain 1 [Source:HGNC Symbol;Acc:952]

Location

Chromosome 2: 215,590,370-215,674,428 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 32 domains and features, is associated with 40810 variant alleles and maps to 803 oligo probes.

Gene

This transcript is a product of gene ENSG00000138376.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000260947.4	BARD1-001	5499	777aa	ENSP00000260947.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2397	Q99728	NM_001282548.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449967.2	BARD1-201	2257	567aa	ENSP00000406752.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EUI3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000432456.1	BARD1-002	921	148aa	ENSP00000405020.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J6M1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000421162.1	BARD1-005	766	216aa	ENSP00000392245.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IYG1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000455743.1	BARD1-003	2261	76aa	ENSP00000412186.1	Nonsense mediated decay		F8WCG2	-	-
ENST00000471787.1	BARD1-007	872	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471590.1	BARD1-004	617	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000479904.1	BARD1-008	573	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465841.1	BARD1-006	175	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 5,499 bps, Translation length: 777 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q99728

CCDS

This transcript is a member of the Human CCDS set: CCDS2397

Version

ENST00000260947.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000256602 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000260947.4 BARD1-001

Summary