Transcript: ENST00000389629.4 RTF1-001

Description

Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28996]

Gene Synonyms

GTL7, KIAA0252

Location

About this transcript

This transcript has 18 exons, is annotated with 16 domains and features, is associated with 30713 variant alleles and maps to 992 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000389629.4	RTF1-001	5021	710aa	ENSP00000374280.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32200	I7GPQ7 Q92541	NM_015138.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560447.1	RTF1-007	551	171aa	ENSP00000452973.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000462276.1	RTF1-002	485	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000558298.1	RTF1-004	327	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000558117.1	RTF1-005	552	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000473214.1	RTF1-003	475	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000561076.1	RTF1-006	314	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 5,021 bps, Translation length: 710 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q92541

CCDS

This transcript is a member of the Human CCDS set: CCDS32200

Version

ENST00000389629.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000258111 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.