Transcript: ENST00000493955.1 SMC2-003

Description

structural maintenance of chromosomes 2 [Source:HGNC Symbol;Acc:14011]

Gene Synonyms

CAP-E, CAPE, SMC-2, SMC2L1, hCAP-E

Location

Chromosome 9: 106,889,688-106,901,933 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 5 domains and features, is associated with 5562 variant alleles and maps to 323 oligo probes.

Gene

This transcript is a product of gene ENSG00000136824.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000286398.7	SMC2-201	5976	1197aa	ENSP00000286398.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35086	O95347 Q5T821	NM_006444.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000374793.3	SMC2-001	5909	1197aa	ENSP00000363925.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35086	O95347 Q5T821	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000374787.3	SMC2-002	4266	1197aa	ENSP00000363919.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35086	O95347 Q5T821	NM_001042550.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000303219.8	SMC2-202	3650	1099aa	ENSP00000306152.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O95347 Q5T821	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000440179.1	SMC2-004	705	145aa	ENSP00000414999.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T821	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000493955.1	SMC2-003	1408	166aa	ENSP00000431534.1	Nonsense mediated decay		O95347	-	-

Summary

Statistics

Exons: 7, Coding exons: 4, Transcript length: 1,408 bps, Translation length: 166 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O95347

Version

ENST00000493955.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000053471 (version 4)

Favourite species

All species

Recent locations

Transcript: ENST00000493955.1 SMC2-003

Summary