Transcript: ENST00000466842.1 FAM71F1-008

Description

family with sequence similarity 71, member F1 [Source:HGNC Symbol;Acc:30704]

Gene Synonyms

FAM137A, NYD-SP18

Location

Chromosome 7: 128,358,883-128,366,908 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 3 domains and features, is associated with 3275 variant alleles and maps to 133 oligo probes.

Gene

This transcript is a product of gene ENSG00000135248.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000315184.5	FAM71F1-002	1718	344aa	ENSP00000326652.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5804	H7C4R1 Q96KD3	NM_032599.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000485070.1	FAM71F1-001	1574	243aa	ENSP00000418192.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS64763	Q8NA48	NM_001282789.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000466842.1	FAM71F1-008	404	134aa	ENSP00000417930.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C4R1	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000484425.2	FAM71F1-003	1818	143aa	ENSP00000418591.2	Nonsense mediated decay		F8WC78	-	-
ENST00000471558.1	FAM71F1-006	1201	286aa	ENSP00000418672.1	Nonsense mediated decay		F8WC62	-	-
ENST00000469348.1	FAM71F1-005	867	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483459.1	FAM71F1-007	662	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000493738.1	FAM71F1-004	873	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 404 bps, Translation length: 134 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000466842.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000350550 (version 1)

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Transcript: ENST00000466842.1 FAM71F1-008

Summary