Transcript: ENST00000256552.6 TRPM1-004

Description

transient receptor potential cation channel, subfamily M, member 1 [Source:HGNC Symbol;Acc:7146]

Gene Synonyms

CSNB1C, LTRPC1, MLSN, MLSN1

Location

Chromosome 15: 31,293,537-31,393,924 reverse strand.

About this transcript

This transcript has 28 exons, is annotated with 20 domains and features, is associated with 43910 variant alleles and maps to 708 oligo probes.

Gene

This transcript is a product of gene ENSG00000134160.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000542188.1	TRPM1-201	5715	1642aa	ENSP00000437849.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58347	H0YKU7 Q7Z4N2	NM_001252020.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000397795.2	TRPM1-001	5687	1603aa	ENSP00000380897.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10024	H0YKU7 Q7Z4N2	NM_002420.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000256552.6	TRPM1-004	5514	1625aa	ENSP00000256552.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58346	H0YKU7 Q7Z4N2	NM_001252024.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558768.1	TRPM1-007	4584	1527aa	ENSP00000453119.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q7Z4N2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000558445.1	TRPM1-008	4282	1390aa	ENSP00000452946.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YKU7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000559177.1	TRPM1-002	1627	505aa	ENSP00000453477.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YM61	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000559179.1	TRPM1-003	1002	136aa	ENSP00000453851.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58345	Q7Z4N2	NM_001252030.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560801.1	TRPM1-006	4457	230aa	ENSP00000453644.1	Nonsense mediated decay		Q7Z4N2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000560658.1	TRPM1-005	1649	300aa	ENSP00000454077.1	Nonsense mediated decay		Q7Z4N2	-	-
ENST00000558212.1	TRPM1-011	670	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000557948.1	TRPM1-010	564	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000558070.1	TRPM1-009	426	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 28, Coding exons: 27, Transcript length: 5,514 bps, Translation length: 1,625 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7Z4N2

CCDS

This transcript is a member of the Human CCDS set: CCDS58346

Version

ENST00000256552.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Stop codons

This transcript has a variant, rs3784589, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HAPMAP-MKK, CSHL-HAPMAP:HAPMAP-GIH.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000417166 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000256552.6 TRPM1-004

Summary