Transcript: ENST00000554560.1 CATSPERB-004

Description

catsper channel auxiliary subunit beta [Source:HGNC Symbol;Acc:20500]

Gene Synonyms

C14orf161, CatSper(beta), FLJ14298

Location

Chromosome 14: 92,189,402-92,247,051 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 3 domains and features, is associated with 22390 variant alleles and maps to 63 oligo probes.

Gene

This transcript is a product of gene ENSG00000133962.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000256343.3	CATSPERB-001	3623	1116aa	ENSP00000256343.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32142	G3V352 G3V584 Q9H7T0	NM_024764.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000553329.1	CATSPERB-003	582	150aa	ENSP00000450878.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V2V0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000556661.1	CATSPERB-006	491	74aa	ENSP00000451455.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V352	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000554560.1	CATSPERB-004	432	100aa	ENSP00000452224.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V352 G3V584	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000553676.1	CATSPERB-005	430	73aa	ENSP00000451047.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V352	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000557036.1	CATSPERB-002	2229	67aa	ENSP00000451083.1	Nonsense mediated decay		H0YJA5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000556901.1	CATSPERB-008	1310	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000556429.1	CATSPERB-007	752	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 432 bps, Translation length: 100 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000554560.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000411773 (version 1)

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Transcript: ENST00000554560.1 CATSPERB-004

Summary