Transcript: ENST00000393217.2 LRRIQ1-004

Description

leucine-rich repeats and IQ motif containing 1 [Source:HGNC Symbol;Acc:25708]

Gene Synonyms

FLJ12303, KIAA1801, RP11-193M21.1

Location

Chromosome 12: 85,430,149-85,638,883 forward strand.

About this transcript

This transcript has 27 exons, is annotated with 53 domains and features, is associated with 93263 variant alleles and maps to 625 oligo probes.

Gene

This transcript is a product of gene ENSG00000133640.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000393217.2	LRRIQ1-004	5394	1722aa	ENSP00000376910.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41816	A8MY60 Q96JM4	NM_001079910.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000526363.1	LRRIQ1-006	559	107aa	ENSP00000431756.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000393212.3	LRRIQ1-007	555	164aa	ENSP00000376906.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A8MY60	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000533414.1	LRRIQ1-003	432	144aa	ENSP00000436898.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000528777.3	LRRIQ1-005	786	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000525971.2	LRRIQ1-001	4464	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000529408.1	LRRIQ1-002	1890	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 27, Coding exons: 26, Transcript length: 5,394 bps, Translation length: 1,722 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96JM4

CCDS

This transcript is a member of the Human CCDS set: CCDS41816

Version

ENST00000393217.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000388249 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000393217.2 LRRIQ1-004

Summary