Transcript: ENST00000377022.3 CASZ1-003

Description

castor zinc finger 1 [Source:HGNC Symbol;Acc:26002]

Gene Synonyms

CAS11, CST, FLJ20321, SRG, ZNF693, castor, cst, dJ734G22.1

Location

Chromosome 1: 10,696,661-10,856,705 reverse strand.

About this transcript

This transcript has 21 exons, is annotated with 38 domains and features, is associated with 75613 variant alleles and maps to 870 oligo probes.

Gene

This transcript is a product of gene ENSG00000130940.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000377022.3	CASZ1-003	7936	1759aa	ENSP00000366221.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41246	Q86V15	NM_001079843.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000344008.5	CASZ1-001	4405	1166aa	ENSP00000339445.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS120	Q86V15	NM_017766.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000447850.3	CASZ1-009	695	231aa	ENSP00000467769.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EQC6	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000478728.2	CASZ1-006	648	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472814.1	CASZ1-008	451	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478524.1	CASZ1-004	337	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496432.2	CASZ1-007	3279	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492173.1	CASZ1-002	2267	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000490176.1	CASZ1-005	432	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 21, Coding exons: 18, Transcript length: 7,936 bps, Translation length: 1,759 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86V15

CCDS

This transcript is a member of the Human CCDS set: CCDS41246

Version

ENST00000377022.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000005673 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000377022.3 CASZ1-003

Summary