Transcript: ENST00000409656.1 PSD4-004

Description

pleckstrin and Sec7 domain containing 4 [Source:HGNC Symbol;Acc:19096]

Gene Synonyms

EFA6B, TIC

Location

Chromosome 2: 113,942,621-113,959,143 forward strand.

About this transcript

This transcript has 15 exons, is associated with 7603 variant alleles and maps to 669 oligo probes.

Gene

This transcript is a product of gene ENSG00000125637.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000441564.3	PSD4-003	11234	1027aa	ENSP00000413997.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8NDX1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000245796.6	PSD4-001	5188	1056aa	ENSP00000245796.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33276	B3KN27 Q8NDX1	NM_012455.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409378.1	PSD4-010	580	178aa	ENSP00000386606.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B8ZZZ5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000409656.1	PSD4-004	2394	41aa	ENSP00000386373.1	Nonsense mediated decay		H7BZ06	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000465917.1	PSD4-012	910	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485525.1	PSD4-007	586	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000418251.2	PSD4-002	5600	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000460725.1	PSD4-005	2763	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000464559.1	PSD4-006	2424	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487574.1	PSD4-009	670	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000493329.1	PSD4-008	606	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465592.1	PSD4-011	548	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 3, Transcript length: 2,394 bps, Translation length: 41 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000409656.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000330792 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000409656.1 PSD4-004

Summary