Transcript: ENST00000281928.3 MED13L-001

Description

mediator complex subunit 13-like [Source:HGNC Symbol;Acc:22962]

Gene Synonyms

KIAA1025, PROSIT240, THRAP2, TRAP240L

Location

Chromosome 12: 116,396,381-116,715,143 reverse strand.

About this transcript

This transcript has 31 exons, is annotated with 13 domains and features, is associated with 139831 variant alleles and maps to 1094 oligo probes.

Gene

This transcript is a product of gene ENSG00000123066.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000281928.3	MED13L-001	9530	2210aa	ENSP00000281928.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9177	Q71F56 Q9H6Z7	NM_015335.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000549786.1	MED13L-005	1041	190aa	ENSP00000446782.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000552340.1	MED13L-006	665	140aa	ENSP00000449876.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YIQ7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000552447.1	MED13L-009	584	195aa	ENSP00000449895.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000548743.1	MED13L-003	568	93aa	ENSP00000448553.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VRB8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000551197.1	MED13L-004	489	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000552023.1	MED13L-010	413	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000549755.1	MED13L-002	2339	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000548694.1	MED13L-008	880	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000548784.1	MED13L-007	485	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 31, Coding exons: 31, Transcript length: 9,530 bps, Translation length: 2,210 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q71F56

CCDS

This transcript is a member of the Human CCDS set: CCDS9177

Version

ENST00000281928.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000403879 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000281928.3 MED13L-001

Summary