Transcript: ENST00000460428.1 SFPQ-003

Description

splicing factor proline/glutamine-rich [Source:HGNC Symbol;Acc:10774]

Gene Synonyms

POMP100, PSF

Location

Chromosome 1: 35,641,979-35,653,643 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 5 domains and features, is associated with 6098 variant alleles and maps to 272 oligo probes.

Gene

This transcript is a product of gene ENSG00000116560.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000357214.5	SFPQ-001	3747	707aa	ENSP00000349748.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS388	P23246 Q9BSV4	NM_005066.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000470472.1	SFPQ-002	874	223aa	ENSP00000424440.1	Nonsense mediated decay		H0Y9K7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000460428.1	SFPQ-003	464	88aa	ENSP00000425071.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000468598.1	SFPQ-004	2835	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466213.1	SFPQ-005	1431	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485365.1	SFPQ-007	693	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466745.1	SFPQ-008	662	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471991.1	SFPQ-009	440	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490668.1	SFPQ-010	434	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485454.1	SFPQ-006	339	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 4, Transcript length: 464 bps, Translation length: 88 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000460428.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000012073 (version 4)

Favourite species

All species

Recent locations

Transcript: ENST00000460428.1 SFPQ-003

Summary