Transcript: ENST00000419810.2 HPCAL1-003

Description

hippocalcin-like 1 [Source:HGNC Symbol;Acc:5145]

Gene Synonyms

BDR1, HLP2, VILIP-3

Location

About this transcript

This transcript has 8 exons, is annotated with 22 domains and features, is associated with 45270 variant alleles and maps to 469 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000381765.3	HPCAL1-002	1904	193aa	ENSP00000371184.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1671	C9JW46 O75544 P37235 Q6FGY1	NM_134421.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000307845.3	HPCAL1-001	1751	193aa	ENSP00000310749.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1671	C9JW46 O75544 P37235 Q6FGY1	NM_002149.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000422133.1	HPCAL1-005	587	103aa	ENSP00000388856.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000423674.1	HPCAL1-004	586	30aa	ENSP00000413689.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JW46	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000419810.2	HPCAL1-003	4781	175aa	ENSP00000416359.2	Nonsense mediated decay		C9JW46 E9PC71	-	-

Summary

Statistics

Exons: 8, Coding exons: 2, Transcript length: 4,781 bps, Translation length: 175 residues

Version

ENST00000419810.2

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000323534 (version 2)