Transcript: ENST00000409986.1 LOXL3-003

Description

lysyl oxidase-like 3 [Source:HGNC Symbol;Acc:13869]

Gene Synonyms

LOXL

Location

Chromosome 2: 74,760,855-74,781,088 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 34 domains and features, is associated with 8786 variant alleles and maps to 309 oligo probes.

Gene

This transcript is a product of gene ENSG00000115318.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264094.3	LOXL3-001	3502	753aa	ENSP00000264094.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1953	C9J5M1 P58215 Q2EHP2 Q53TY1 Q8N505	NM_032603.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409549.1	LOXL3-004	2897	697aa	ENSP00000386696.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J5M1 E7END4 Q8N505	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409249.1	LOXL3-005	2431	471aa	ENSP00000387103.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B8ZZT6 C9J5M1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393937.2	LOXL3-002	2398	608aa	ENSP00000377512.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q2EHP2 Q6IPL7 Q8N505	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409986.1	LOXL3-003	2005	586aa	ENSP00000386545.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B9A025	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000413469.1	LOXL3-007	1001	303aa	ENSP00000398260.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J5M1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000420535.1	LOXL3-009	539	180aa	ENSP00000404026.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000484369.1	LOXL3-010	762	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481835.2	LOXL3-008	710	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470907.2	LOXL3-006	2837	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 2,005 bps, Translation length: 586 residues

Version

ENST00000409986.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000328560 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000409986.1 LOXL3-003

Summary