Transcript: ENST00000480058.1 PRPF4B-001

Description

pre-mRNA processing factor 4B [Source:HGNC Symbol;Acc:17346]

Gene Synonyms

KIAA0536, PR4H, PRP4, PRP4H, PRP4K, Prp4, dJ1013A10.1

Location

Chromosome 6: 4,021,501-4,065,216 forward strand.

About this transcript

This transcript has 16 exons, is annotated with 24 domains and features, is associated with 19928 variant alleles and maps to 1073 oligo probes.

Gene

This transcript is a product of gene ENSG00000112739.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000337659.6	PRPF4B-011	4415	1007aa	ENSP00000337194.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4488	F5H2U2 H0YDJ3 Q13523	NM_003913.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538861.1	PRPF4B-201	3216	993aa	ENSP00000439331.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H2U2 H0YDJ3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000480058.1	PRPF4B-001	6775	1007aa	ENSP00000433547.1	Nonsense mediated decay	CCDS4488	F5H2U2 H0YDJ3 Q13523	-	-
ENST00000481109.1	PRPF4B-003	2364	587aa	ENSP00000433714.1	Nonsense mediated decay		H0YDJ3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000494674.1	PRPF4B-010	1727	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466185.1	PRPF4B-007	1297	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461612.1	PRPF4B-009	629	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490653.1	PRPF4B-008	581	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490399.1	PRPF4B-006	576	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000463634.2	PRPF4B-002	2590	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 15, Transcript length: 6,775 bps, Translation length: 1,007 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13523

CCDS

This transcript is a member of the Human CCDS set: CCDS4488

Version

ENST00000480058.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000039704 (version 3)

Favourite species

All species

Recent locations

Transcript: ENST00000480058.1 PRPF4B-001

Summary