Transcript: ENST00000361545.5 CLIP2-001

Description

CAP-GLY domain containing linker protein 2 [Source:HGNC Symbol;Acc:2586]

Gene Synonyms

CLIP, CLIP-115, CYLN2, KIAA0291, WBSCR3, WBSCR4, WSCR3, WSCR4

Location

Chromosome 7: 73,703,805-73,820,260 forward strand.

About this transcript

This transcript has 16 exons, is annotated with 27 domains and features, is associated with 55991 variant alleles and maps to 628 oligo probes.

Gene

This transcript is a product of gene ENSG00000106665.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000223398.6	CLIP2-201	5563	1046aa	ENSP00000223398.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5569	Q7Z5B7 Q9UDT6	NM_003388.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361545.5	CLIP2-001	5445	1011aa	ENSP00000355151.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5570	Q7Z5B7 Q9UDT6	NM_032421.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395060.1	CLIP2-002	3141	1046aa	ENSP00000378500.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5569	Q7Z5B7 Q9UDT6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000487447.1	CLIP2-008	564	28aa	ENSP00000419938.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000493166.1	CLIP2-006	561	187aa	ENSP00000417597.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000487091.1	CLIP2-003	989	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000482424.1	CLIP2-005	971	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474962.1	CLIP2-007	690	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000491075.1	CLIP2-004	551	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 15, Transcript length: 5,445 bps, Translation length: 1,011 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UDT6

CCDS

This transcript is a member of the Human CCDS set: CCDS5570

Version

ENST00000361545.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000252555 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000361545.5 CLIP2-001

Summary