Transcript: ENST00000599644.1 SIPA1L3-004

Description

signal-induced proliferation-associated 1 like 3 [Source:HGNC Symbol;Acc:23801]

Gene Synonyms

KIAA0545, SPAL3

Location

Chromosome 19: 38,397,885-38,398,614 forward strand.

About this transcript

This transcript has 2 exons, is associated with 340 variant alleles and maps to 33 oligo probes.

Gene

This transcript is a product of gene ENSG00000105738.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000222345.6	SIPA1L3-001	7987	1781aa	ENSP00000222345.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33007	O60292 Q8IUV1	NM_015073.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000601054.1	SIPA1L3-012	572	190aa	ENSP00000472734.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R2Q7	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000600919.1	SIPA1L3-010	407	136aa	ENSP00000471706.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000595982.1	SIPA1L3-005	163	55aa	ENSP00000472844.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000595384.1	SIPA1L3-006	785	165aa	ENSP00000468981.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000476317.2	SIPA1L3-002	608	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000599644.1	SIPA1L3-004	545	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000596403.1	SIPA1L3-013	811	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000595495.1	SIPA1L3-011	584	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000601881.1	SIPA1L3-009	568	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000601222.1	SIPA1L3-007	546	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000594553.1	SIPA1L3-008	374	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 545 bps,

Version

ENST00000599644.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000461003 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000599644.1 SIPA1L3-004

Summary