Transcript: ENST00000594528.1 GRIK5-005

Description

glutamate receptor, ionotropic, kainate 5 [Source:HGNC Symbol;Acc:4583]

Gene Synonyms

EAA2, GRIK2, GluK5, KA2

Location

Chromosome 19: 42,525,483-42,569,957 reverse strand.

About this transcript

This transcript has 15 exons, is annotated with 1 domain and feature, is associated with 18422 variant alleles and maps to 370 oligo probes.

Gene

This transcript is a product of gene ENSG00000105737.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262895.3	GRIK5-002	3493	980aa	ENSP00000262895.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12595	Q16478	NM_002088.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000301218.4	GRIK5-001	3310	981aa	ENSP00000301218.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q16478	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000593562.1	GRIK5-004	3308	980aa	ENSP00000470251.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12595	Q16478	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000594528.1	GRIK5-005	2101	110aa	ENSP00000469135.1	Nonsense mediated decay		M0QXF6	-	-
ENST00000454993.2	GRIK5-003	2370	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000602210.1	GRIK5-006	389	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 3, Transcript length: 2,101 bps, Translation length: 110 residues

Version

ENST00000594528.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000463456 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000594528.1 GRIK5-005

Summary