Transcript: ENST00000534261.2 SIGLEC5-001

Description

sialic acid binding Ig-like lectin 5 [Source:HGNC Symbol;Acc:10874]

Gene Synonyms

CD170, CD33L2, OB-BP2, OBBP2, SIGLEC-5

Location

Chromosome 19: 52,115,184-52,148,798 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 26 domains and features, is associated with 14292 variant alleles and maps to 466 oligo probes.

Gene

This transcript is a product of gene ENSG00000105501.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000222107.4	SIGLEC5-201	2498	551aa	ENSP00000222107.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O15389	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000570106.2	SIGLEC5-202	2359	551aa	ENSP00000455510.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33088	O15389	NM_003830.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000534261.2	SIGLEC5-001	2356	551aa	ENSP00000473238.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33088	O15389	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 2,356 bps, Translation length: 551 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O15389

CCDS

This transcript is a member of the Human CCDS set: CCDS33088

Version

ENST00000534261.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs8108078, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HAPMAP-LWK, ESP6500:African_American, CSHL-HAPMAP:HapMap-YRI.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000466897 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000534261.2 SIGLEC5-001

Summary