Transcript: ENST00000569300.1 GGA2-012

Description

golgi-associated, gamma adaptin ear containing, ARF binding protein 2 [Source:HGNC Symbol;Acc:16064]

Gene Synonyms

KIAA1080, VEAR

Location

Chromosome 16: 23,503,066-23,533,316 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 7 domains and features, is associated with 13968 variant alleles and maps to 156 oligo probes.

Gene

This transcript is a product of gene ENSG00000103365.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000309859.4	GGA2-001	5973	613aa	ENSP00000311962.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10611	H3BMN6 Q9UJY4	NM_015044.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000567468.1	GGA2-002	1713	223aa	ENSP00000454455.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BMM6 H3BMN6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000569300.1	GGA2-012	572	125aa	ENSP00000455331.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPI3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000562944.1	GGA2-006	388	117aa	ENSP00000459560.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BMN6 I3L2C4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000562117.1	GGA2-009	387	129aa	ENSP00000459414.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000569189.2	GGA2-008	586	59aa	ENSP00000460975.1	Nonsense mediated decay		H3BMN6	-	-
ENST00000570111.1	GGA2-011	563	59aa	ENSP00000454469.1	Nonsense mediated decay		H3BMN6	-	-
ENST00000563494.1	GGA2-010	553	59aa	ENSP00000456247.1	Nonsense mediated decay		H3BMN6	-	-
ENST00000563047.1	GGA2-018	366	49aa	ENSP00000455293.1	Nonsense mediated decay		H3BPF4	-	-
ENST00000569182.1	GGA2-013	587	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000566685.1	GGA2-016	571	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000567339.1	GGA2-015	293	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000568922.1	GGA2-014	1807	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000568799.1	GGA2-007	1403	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000566547.1	GGA2-004	603	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000567201.1	GGA2-017	576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000566651.1	GGA2-005	332	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 572 bps, Translation length: 125 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000569300.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000434835 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000569300.1 GGA2-012

Summary