Transcript: ENST00000563941.1 MSLN-003

Description

mesothelin [Source:HGNC Symbol;Acc:7371]

Gene Synonyms

CAK1, MPF, SMRP

Location

Chromosome 16: 810,762-818,862 forward strand.

About this transcript

This transcript has 18 exons, is annotated with 10 domains and features, is associated with 7073 variant alleles and maps to 617 oligo probes.

Gene

This transcript is a product of gene ENSG00000102854.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000566549.1	MSLN-002	2418	622aa	ENSP00000456702.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45370	H3BV92 Q13421	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545450.2	MSLN-004	2162	622aa	ENSP00000442965.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45370	H3BV92 Q13421	NM_005823.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000382862.3	MSLN-001	2116	630aa	ENSP00000372313.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32356	H3BV92 Q13421	NM_013404.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000563941.1	MSLN-003	2109	622aa	ENSP00000456008.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45370	H3BV92 Q13421	NM_001177355.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000561896.1	MSLN-006	1195	398aa	ENSP00000457847.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BUX1	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000563651.1	MSLN-008	1084	332aa	ENSP00000456132.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BR90 H3BV92	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000566269.2	MSLN-005	1068	334aa	ENSP00000454295.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000569566.1	MSLN-007	553	171aa	ENSP00000458003.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BV92	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 18, Coding exons: 16, Transcript length: 2,109 bps, Translation length: 622 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13421

CCDS

This transcript is a member of the Human CCDS set: CCDS45370

Version

ENST00000563941.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000420612 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000563941.1 MSLN-003

Summary