Transcript: ENST00000494396.1 SYP-005

Description

synaptophysin [Source:HGNC Symbol;Acc:11506]

Gene Synonyms

MRXSYP

Location

Chromosome X: 49,053,476-49,056,654 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 1127 variant alleles and maps to 150 oligo probes.

Gene

This transcript is a product of gene ENSG00000102003.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000263233.4	SYP-001	2486	313aa	ENSP00000263233.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14321	B7Z359 P08247	NM_003179.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000479808.1	SYP-004	1850	313aa	ENSP00000418169.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14321	B7Z359 P08247	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538567.1	SYP-201	870	195aa	ENSP00000437456.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z359	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000472598.1	SYP-002	761	203aa	ENSP00000418387.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000376303.2	SYP-003	858	40aa	ENSP00000365480.2	Nonsense mediated decay		G5E9A2	-	-
ENST00000469389.1	SYP-009	581	118aa	ENSP00000418987.1	Nonsense mediated decay		F2Z3E1	-	-
ENST00000466635.1	SYP-008	513	118aa	ENSP00000420774.1	Nonsense mediated decay		F2Z3E1	-	-
ENST00000494396.1	SYP-005	2062	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472737.1	SYP-007	574	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 2,062 bps,

Version

ENST00000494396.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000357749 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000494396.1 SYP-005

Summary