Transcript: ENST00000400217.2 CSNK2A1-003

Description

casein kinase 2, alpha 1 polypeptide [Source:HGNC Symbol;Acc:2457]

Gene Synonyms

CK2A1, CKII, CSNK2A3

Location

Chromosome 20: 464,345-524,431 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 9 domains and features, is associated with 28067 variant alleles and maps to 468 oligo probes.

Gene

This transcript is a product of gene ENSG00000101266.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000217244.3	CSNK2A1-002	4416	391aa	ENSP00000217244.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13003	P68400	NM_177559.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000349736.5	CSNK2A1-001	4299	391aa	ENSP00000339247.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13003	P68400	NM_001895.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000400227.3	CSNK2A1-201	1483	385aa	ENSP00000383086.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EU96	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000400217.2	CSNK2A1-003	1451	255aa	ENSP00000383076.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13004	P68400	NM_177560.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000609525.1	CSNK2A1-006	581	74aa	ENSP00000476547.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000608066.1	CSNK2A1-005	577	79aa	ENSP00000476486.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000460062.2	CSNK2A1-007	552	27aa	ENSP00000477147.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000609606.1	CSNK2A1-008	589	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000608490.1	CSNK2A1-004	558	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 8, Transcript length: 1,451 bps, Translation length: 255 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P68400

CCDS

This transcript is a member of the Human CCDS set: CCDS13004

Version

ENST00000400217.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000251396 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000400217.2 CSNK2A1-003

Summary