Transcript: ENST00000588630.1 POLRMT-004

Description

polymerase (RNA) mitochondrial (DNA directed) [Source:HGNC Symbol;Acc:9200]

Gene Synonyms

APOLMT, MTRNAP, MTRPOL, h-mtRPOL

Location

Chromosome 19: 624,725-625,509 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 619 variant alleles and maps to 50 oligo probes.

Gene

This transcript is a product of gene ENSG00000099821.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000588649.2	POLRMT-001	3829	1230aa	ENSP00000465759.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12036	O00411	NM_005035.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000590573.2	POLRMT-007	1048	349aa	ENSP00000466504.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000590336.1	POLRMT-015	429	143aa	ENSP00000468658.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000607260.1	POLRMT-016	590	62aa	ENSP00000475425.1	Nonsense mediated decay		U3KQ10	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000592863.1	POLRMT-006	501	56aa	ENSP00000473524.2	Nonsense mediated decay		R4GN79	-	-
ENST00000586384.1	POLRMT-005	1326	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000587057.1	POLRMT-011	1223	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000590709.2	POLRMT-009	851	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000588630.1	POLRMT-004	567	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000592633.1	POLRMT-012	460	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000589961.1	POLRMT-013	350	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 567 bps,

Version

ENST00000588630.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000452182 (version 1)

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Transcript: ENST00000588630.1 POLRMT-004

Summary