Transcript: ENST00000474008.1 SRCAP-006

Description

Snf2-related CREBBP activator protein [Source:HGNC Symbol;Acc:16974]

Gene Synonyms

DOMO1, EAF1, FLHS, KIAA0309, SWR1

Location

Chromosome 16: 30,745,271-30,747,584 forward strand.

About this transcript

This transcript has 2 exons, is associated with 1282 variant alleles and maps to 121 oligo probes.

Gene

This transcript is a product of gene ENSG00000080603.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262518.4	SRCAP-001	10474	3230aa	ENSP00000262518.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10689	C9J4U4 G1UI29 Q6ZRS2	NM_006662.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395059.2	SRCAP-202	10287	3168aa	ENSP00000378499.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J4U4 G1UI29 Q6ZRS2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000344771.4	SRCAP-201	9999	3072aa	ENSP00000343042.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J4U4 Q6ZRS2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000411466.2	SRCAP-004	836	100aa	ENSP00000405186.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J4U4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000380361.3	SRCAP-002	10804	3053aa	ENSP00000369719.3	Nonsense mediated decay		Q6ZRS2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000483083.1	SRCAP-003	5043	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474008.1	SRCAP-006	730	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 730 bps,

Version

ENST00000474008.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000341716 (version 1)

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Transcript: ENST00000474008.1 SRCAP-006

Summary