Transcript: ENST00000587782.1 RDH8-002

Description

retinol dehydrogenase 8 (all-trans) [Source:HGNC Symbol;Acc:14423]

Gene Synonyms

PRRDH, SDR28C2

Location

Chromosome 19: 10,131,437-10,132,746 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 1 domain and feature, is associated with 826 variant alleles and maps to 168 oligo probes.

Gene

This transcript is a product of gene ENSG00000080511.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000591589.1	RDH8-001	1715	331aa	ENSP00000466058.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12223	K7ELF7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000171214.1	RDH8-201	1714	311aa	ENSP00000171214.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NYR8	NM_015725.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000587782.1	RDH8-002	702	79aa	ENSP00000465773.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000589570.1	RDH8-003	430	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 702 bps, Translation length: 79 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000587782.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs77833898, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) ESP6500:European_American.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000451127 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000587782.1 RDH8-002

Summary