Transcript: ENST00000358730.2 RFX3-005

Description

regulatory factor X, 3 (influences HLA class II expression) [Source:HGNC Symbol;Acc:9984]

Location

Chromosome 9: 3,247,037-3,395,596 reverse strand.

About this transcript

This transcript has 14 exons, is annotated with 11 domains and features, is associated with 78197 variant alleles and maps to 463 oligo probes.

Gene

This transcript is a product of gene ENSG00000080298.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000382004.3	RFX3-006	9307	749aa	ENSP00000371434.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6449	F6USP3 F6XM74 P48380	NM_134428.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000302303.1	RFX3-201	3275	707aa	ENSP00000303847.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6450	F6USP3 F6XM74 P48380	NM_002919.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000358730.2	RFX3-005	2971	707aa	ENSP00000351574.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6450	F6USP3 F6XM74 P48380	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449190.1	RFX3-004	869	138aa	ENSP00000399352.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6XM74	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000457373.1	RFX3-003	822	216aa	ENSP00000405664.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6UGA0 F6XM74	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000458034.1	RFX3-008	814	174aa	ENSP00000400026.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6USP3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000451859.1	RFX3-002	740	184aa	ENSP00000411756.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6UV76 F6XM74	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000449234.1	RFX3-007	633	124aa	ENSP00000415594.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y7W5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000442560.1	RFX3-009	526	135aa	ENSP00000410988.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y790	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000420720.1	RFX3-010	492	156aa	ENSP00000416189.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y7Z4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000381984.2	RFX3-001	364	85aa	ENSP00000371414.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A9Z1Z2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 2,971 bps, Translation length: 707 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P48380

CCDS

This transcript is a member of the Human CCDS set: CCDS6450

Version

ENST00000358730.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000051544 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000358730.2 RFX3-005

Summary