Transcript: ENST00000417391.1 XRCC5-003

Description

X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining) [Source:HGNC Symbol;Acc:12833]

Gene Synonyms

G22P2, KARP-1, KARP1, KU80, KUB2, Ku86, NFIV

Location

Chromosome 2: 216,974,074-216,983,831 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 5 domains and features, is associated with 4706 variant alleles and maps to 155 oligo probes.

Gene

This transcript is a product of gene ENSG00000079246.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000392133.3	XRCC5-001	3761	732aa	ENSP00000375978.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2402	C9JZ81 P13010 Q53T09 Q53TC2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000392132.2	XRCC5-201	3428	732aa	ENSP00000375977.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2402	C9JZ81 P13010 Q53T09 Q53TC2	NM_021141.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000417391.1	XRCC5-003	605	131aa	ENSP00000401318.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JZ81	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000451695.1	XRCC5-006	415	19aa	ENSP00000395108.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000471649.1	XRCC5-008	610	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000429133.1	XRCC5-005	576	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000460284.1	XRCC5-010	2962	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485763.1	XRCC5-009	616	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476360.1	XRCC5-004	610	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000493706.1	XRCC5-007	564	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 4, Transcript length: 605 bps, Translation length: 131 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000417391.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000337287 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000417391.1 XRCC5-003

Summary