Transcript: ENST00000573867.1 SCARF1-010

Description

scavenger receptor class F, member 1 [Source:HGNC Symbol;Acc:16820]

Gene Synonyms

KIAA0149, SREC, SREC-I, SREC1

Location

Chromosome 17: 1,546,614-1,549,017 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 1387 variant alleles and maps to 150 oligo probes.

Gene

This transcript is a product of gene ENSG00000074660.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000263071.4	SCARF1-001	3443	830aa	ENSP00000263071.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11007	Q14162	NM_145350.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000348987.3	SCARF1-201	3185	744aa	ENSP00000323964.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q14162	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000571272.1	SCARF1-002	2871	569aa	ENSP00000458174.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45564	Q14162	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000434376.2	SCARF1-008	3342	342aa	ENSP00000411167.2	Nonsense mediated decay		Q14162	-	-
ENST00000573852.1	SCARF1-005	2698	49aa	ENSP00000461468.1	Nonsense mediated decay		I3L4R9	-	-
ENST00000574545.1	SCARF1-006	894	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000576012.1	SCARF1-004	3292	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000570902.1	SCARF1-007	1060	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000573867.1	SCARF1-010	939	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 939 bps,

Version

ENST00000573867.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000438495 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000573867.1 SCARF1-010

Summary