Description
SMG6 nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:17809]
Gene Synonyms
C17orf31, EST1A, KIAA0732, SMG-6, hSMG5/7a
Location
Chromosome 17: 1,963,170-1,985,604 reverse strand.
About this transcript
This transcript has 6 exons, is associated with 10832 variant alleles and maps to 250 oligo probes.
Gene
This transcript is a product of gene ENSG00000070366.9 Show transcript tableHide transcript table
Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
---|---|---|---|---|---|---|---|---|---|
ENST00000544865.1 | SMG6-201 | 6331 | 1388aa | ENSP00000443920.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L176 I3L1W8 I3L355 I3L3A9 I3L421 K7EKV2 K7ELM2 K7ENH7 Q86US8 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
ENST00000263073.6 | SMG6-001 | 5960 | 1419aa | ENSP00000263073.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS11016 | I3L176 I3L1W8 I3L355 I3L3A9 I3L421 K7EKV2 K7ELM2 K7ENH7 Q86US8 | NM_017575.4 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
ENST00000354901.4 | SMG6-002 | 3473 | 511aa | ENSP00000346977.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58498 | I3L176 I3L1W8 I3L355 I3L3A9 I3L421 K7EKV2 K7ELM2 K7ENH7 Q86US8 | NM_001256827.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
ENST00000536871.2 | SMG6-005 | 1865 | 511aa | ENSP00000440283.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58498 | I3L176 I3L1W8 I3L355 I3L3A9 I3L421 K7EKV2 K7ELM2 K7ENH7 Q86US8 | NM_001256828.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
ENST00000572369.1 | SMG6-008 | 689 | 138aa | ENSP00000465793.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7EKV2 K7ELM2 K7ENH7 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
ENST00000575454.1 | SMG6-010 | 652 | 208aa | ENSP00000460273.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L390 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
ENST00000570659.1 | SMG6-019 | 592 | 163aa | ENSP00000460898.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L176 I3L355 I3L3A9 I3L421 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
ENST00000571442.1 | SMG6-015 | 588 | 164aa | ENSP00000459164.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L176 I3L1W8 I3L355 I3L3A9 I3L421 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
ENST00000575663.1 | SMG6-014 | 574 | 162aa | ENSP00000458635.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L176 I3L355 I3L3A9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
ENST00000570606.1 | SMG6-021 | 572 | 123aa | ENSP00000460191.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L355 I3L3A9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
ENST00000575176.1 | SMG6-009 | 557 | 124aa | ENSP00000466139.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7ELM2 K7ENH7 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
ENST00000572205.1 | SMG6-018 | 551 | 115aa | ENSP00000466951.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7ENH7 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
ENST00000570668.1 | SMG6-013 | 547 | 119aa | ENSP00000460301.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L3A9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
ENST00000573166.1 | SMG6-003 | 4236 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
ENST00000570756.1 | SMG6-004 | 2426 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
ENST00000576218.1 | SMG6-020 | 902 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
ENST00000573827.1 | SMG6-023 | 601 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
ENST00000573153.1 | SMG6-012 | 552 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
ENST00000575338.1 | SMG6-007 | 546 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
ENST00000574501.1 | SMG6-022 | 2419 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
ENST00000570874.1 | SMG6-011 | 533 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |