Transcript: ENST00000556227.1 SPTB-005

Description

spectrin, beta, erythrocytic [Source:HGNC Symbol;Acc:11274]

Gene Synonyms

EL3, HS2, HSPTB1, SPH2, SPTB1

Location

Chromosome 14: 65,215,673-65,224,259 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 4544 variant alleles and maps to 134 oligo probes.

Gene

This transcript is a product of gene ENSG00000070182.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000389722.3	SPTB-201	10063	2328aa	ENSP00000374372.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32099	O14725 O14726 P11277 Q59FP5 Q71VF8 Q71VF9 Q71VG0 Q71VG1 Q71VG2	NM_001024858.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000556626.1	SPTB-001	7481	2328aa	ENSP00000451752.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32099	O14725 O14726 P11277 Q59FP5 Q71VF8 Q71VF9 Q71VG0 Q71VG1 Q71VG2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542895.1	SPTB-202	6768	2137aa	ENSP00000443882.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32100	O14725 O14726 P11277 Q71VF8 Q71VF9 Q71VG0 Q71VG1 Q71VG2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000389721.5	SPTB-004	6705	2137aa	ENSP00000374371.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32100	O14725 O14726 P11277 Q71VF8 Q71VF9 Q71VG0 Q71VG1 Q71VG2	NM_000347.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000389720.3	SPTB-007	6321	2106aa	ENSP00000374370.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O14725 O14726 P11277 Q71VF9 Q71VG0 Q71VG1 Q71VG2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000553938.1	SPTB-003	3456	1028aa	ENSP00000451324.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YJE6 Q71VF8 Q71VF9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000342835.4	SPTB-002	1723	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000556227.1	SPTB-005	4741	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000542694.2	SPTB-006	580	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 4,741 bps,

Version

ENST00000556227.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000414079 (version 1)

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Transcript: ENST00000556227.1 SPTB-005

Summary