Transcript: ENST00000426455.1 STAG3-004

Description

stromal antigen 3 [Source:HGNC Symbol;Acc:11356]

Location

Chromosome 7: 99,775,186-99,812,003 forward strand.

About this transcript

This transcript has 34 exons, is annotated with 16 domains and features, is associated with 16226 variant alleles and maps to 1288 oligo probes.

Gene

This transcript is a product of gene ENSG00000066923.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000426455.1	STAG3-004	4450	1225aa	ENSP00000400359.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34703	B4DYS8 C9JTG4 C9JYW5 D6W5U7 Q9UJ98	NM_001282716.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000317296.5	STAG3-001	4198	1225aa	ENSP00000319318.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34703	B4DYS8 C9JTG4 C9JYW5 D6W5U7 Q9UJ98	NM_012447.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394018.2	STAG3-003	4163	1167aa	ENSP00000377586.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS64730	C9J3T3 C9JYW5 H7BYK9	NM_001282718.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000412190.1	STAG3-022	920	184aa	ENSP00000395039.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C0H6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000439782.1	STAG3-010	699	188aa	ENSP00000397067.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J3T3 C9JYW5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000416412.1	STAG3-012	605	144aa	ENSP00000409283.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JTG4 C9JYW5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000422690.1	STAG3-009	534	112aa	ENSP00000407884.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JYW5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000451963.1	STAG3-023	3056	172aa	ENSP00000393790.1	Nonsense mediated decay		H0Y4S6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000440830.1	STAG3-006	3121	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000491498.1	STAG3-020	3031	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000459699.1	STAG3-013	535	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496157.1	STAG3-002	3585	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000479359.1	STAG3-017	780	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000477469.1	STAG3-016	719	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492674.1	STAG3-018	666	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476057.1	STAG3-021	583	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000482546.1	STAG3-011	472	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 34, Coding exons: 33, Transcript length: 4,450 bps, Translation length: 1,225 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UJ98

CCDS

This transcript is a member of the Human CCDS set: CCDS34703

Version

ENST00000426455.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000338734 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000426455.1 STAG3-004

Summary