Transcript: ENST00000470170.1 COL11A1-007

Description

collagen, type XI, alpha 1 [Source:HGNC Symbol;Acc:2186]

Gene Synonyms

CO11A1, COLL6, STL2

Location

Chromosome 1: 103,343,273-103,345,574 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 1311 variant alleles and maps to 391 oligo probes.

Gene

This transcript is a product of gene ENSG00000060718.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000358392.2	COL11A1-202	7327	1818aa	ENSP00000351163.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DQZ0 C9JMN2 P12107	NM_080629.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370096.3	COL11A1-001	7286	1806aa	ENSP00000359114.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS778	B4DQZ0 P12107 Q4FAC4	NM_001854.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000353414.4	COL11A1-201	7174	1767aa	ENSP00000302551.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53348	B4DQZ0 P12107	NM_001190709.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000512756.1	COL11A1-008	5442	1690aa	ENSP00000426533.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS780	B4DQZ0 P12107 Q4FAC4	NM_080630.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000427239.1	COL11A1-002	1709	569aa	ENSP00000408640.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JMN2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000447608.1	COL11A1-003	776	200aa	ENSP00000410177.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C381	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000461720.1	COL11A1-004	678	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475980.1	COL11A1-005	377	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470170.1	COL11A1-007	785	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465209.1	COL11A1-006	297	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 785 bps,

Version

ENST00000470170.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000030087 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000470170.1 COL11A1-007

Summary