Transcript: ENST00000465525.2 PTPRU-004

Description

protein tyrosine phosphatase, receptor type, U [Source:HGNC Symbol;Acc:9683]

Gene Synonyms

FMI, PCP-2, PCP2, PTP, PTP-J, PTP-PI, PTP-RO, PTPPSI, PTPRO, PTPU2, R-PTP-PSI, R-PTP-U, hPTP-J

Location

Chromosome 1: 29,646,722-29,652,724 forward strand.

About this transcript

This transcript has 5 exons, is associated with 2735 variant alleles and maps to 304 oligo probes.

Gene

This transcript is a product of gene ENSG00000060656.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000373779.3	PTPRU-001	5579	1436aa	ENSP00000362884.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS335	B3KT29 Q92729	NM_133178.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000356870.3	PTPRU-202	5579	1442aa	ENSP00000349333.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KT29 E9PH42	NM_133177.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000323874.8	PTPRU-201	5579	1442aa	ENSP00000314987.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KT29 F8W7J5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428026.2	PTPRU-008	5550	1433aa	ENSP00000392332.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53290	B3KT29 Q92729	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000460170.2	PTPRU-002	5337	1440aa	ENSP00000432906.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44098	Q92729	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000345512.3	PTPRU-003	4470	1446aa	ENSP00000334941.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS334	B3KT29 Q92729	NM_005704.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000415600.2	PTPRU-006	1590	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000493601.1	PTPRU-007	695	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000527027.1	PTPRU-009	619	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465525.2	PTPRU-004	1650	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000531385.1	PTPRU-010	737	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492954.1	PTPRU-005	625	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000526080.1	PTPRU-011	424	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 1,650 bps,

Version

ENST00000465525.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000010784 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000465525.2 PTPRU-004

Summary