Transcript: ENST00000519425.1 EFCAB1-004

Description

EF-hand calcium binding domain 1 [Source:HGNC Symbol;Acc:25678]

Gene Synonyms

FLJ11767

Location

Chromosome 8: 49,637,296-49,642,684 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 2957 variant alleles and maps to 272 oligo probes.

Gene

This transcript is a product of gene ENSG00000034239.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000433756.1	EFCAB1-201	2286	159aa	ENSP00000400873.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47853	H9KVD9 Q9HAE3	NM_001142857.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000262103.3	EFCAB1-001	2051	211aa	ENSP00000262103.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6145	Q9HAE3	NM_024593.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000523092.1	EFCAB1-008	648	159aa	ENSP00000430765.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47853	H9KVD9 Q9HAE3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000522254.1	EFCAB1-006	639	129aa	ENSP00000430940.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000523008.1	EFCAB1-010	613	78aa	ENSP00000429644.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000521701.1	EFCAB1-007	920	54aa	ENSP00000430374.1	Nonsense mediated decay		H9KVD9	-	-
ENST00000521002.1	EFCAB1-002	1661	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000521721.1	EFCAB1-009	581	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000519425.1	EFCAB1-004	576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 576 bps,

Version

ENST00000519425.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000377782 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000519425.1 EFCAB1-004

Summary