Transcript: ENST00000308873.6 RUNX3-001

Description

runt-related transcription factor 3 [Source:HGNC Symbol;Acc:10473]

Gene Synonyms

AML2, CBFA3, PEBP2A3, PEBP2aC

Location

About this transcript

This transcript has 5 exons, is annotated with 21 domains and features, is associated with 14298 variant alleles and maps to 484 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000399916.1	RUNX3-201	4340	429aa	ENSP00000382800.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30633	Q13761	NM_001031680.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000308873.6	RUNX3-001	3861	415aa	ENSP00000308051.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS257	Q13761	NM_004350.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000338888.3	RUNX3-002	2629	429aa	ENSP00000343477.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30633	Q13761	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540420.1	RUNX3-202	1392	322aa	ENSP00000444872.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H4J4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000496967.1	RUNX3-004	572	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000479341.1	RUNX3-003	284	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 3,861 bps, Translation length: 415 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13761

CCDS

This transcript is a member of the Human CCDS set: CCDS257

Version

ENST00000308873.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000009284 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.