Transcript: ENST00000506143.1 COL6A6-002

Description

collagen, type VI, alpha 6 [Source:HGNC Symbol;Acc:27023]

Location

About this transcript

This transcript has 28 exons, is annotated with 7 domains and features, is associated with 39633 variant alleles and maps to 678 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000358511.6	COL6A6-001	9581	2263aa	ENSP00000351310.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46911	A6NMZ7	NM_001102608.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000453409.2	COL6A6-201	8458	2263aa	ENSP00000399236.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W6Y7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000511332.1	COL6A6-003	778	259aa	ENSP00000422921.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000506143.1	COL6A6-002	4353	298aa	ENSP00000426006.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 28, Coding exons: 10, Transcript length: 4,353 bps, Translation length: 298 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000506143.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000357022 (version 1)