Transcript: ENST00000467511.1 PTAR1-003

Description

protein prenyltransferase alpha subunit repeat containing 1 [Source:HGNC Symbol;Acc:30449]

Location

Chromosome 9: 72,346,848-72,349,174 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 1025 variant alleles and maps to 60 oligo probes.

Gene

This transcript is a product of gene ENSG00000188647.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000340434.4	PTAR1-002	1417	402aa	ENSP00000344299.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47978	Q7Z6K3	NM_001099666.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000377200.5	PTAR1-001	9876	350aa	ENSP00000366405.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GXY1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000472967.2	PTAR1-004	1689	29aa	ENSP00000440164.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GXY1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000415701.2	PTAR1-005	826	168aa	ENSP00000405943.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000474925.2	PTAR1-006	616	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467511.1	PTAR1-003	530	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 530 bps,

Version

ENST00000467511.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000052583 (version 1)

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Transcript: ENST00000467511.1 PTAR1-003

Summary