Transcript: ENST00000491024.1 PLEKHN1-003

Description

pleckstrin homology domain containing, family N member 1 [Source:HGNC Symbol;Acc:25284]

Gene Synonyms

DKFZP434H2010, RP11-54O7.7

Location

Chromosome 1: 908,892-911,245 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 3 domains and features, is associated with 1641 variant alleles and maps to 122 oligo probes.

Gene

This transcript is a product of gene ENSG00000187583.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000379410.3	PLEKHN1-001	2404	611aa	ENSP00000368720.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4	J3KSM5 Q494U1	NM_032129.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000379409.2	PLEKHN1-005	2455	663aa	ENSP00000368719.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSM5 Q494U1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000379407.3	PLEKHN1-004	2194	576aa	ENSP00000368717.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53256	J3KSM5 Q494U1	NM_001160184.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000491024.1	PLEKHN1-003	698	176aa	ENSP00000462558.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSM5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000480267.1	PLEKHN1-002	464	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 698 bps, Translation length: 176 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000491024.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000097942 (version 2)

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Transcript: ENST00000491024.1 PLEKHN1-003

Summary