Transcript: ENST00000334258.5 SYNE3-005

Description

spectrin repeat containing, nuclear envelope family member 3 [Source:HGNC Symbol;Acc:19861]

Gene Synonyms

C14orf49, FLJ25605, NET53, Nesp3, Nesprin-3

Location

Chromosome 14: 95,883,831-95,942,173 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 25 domains and features, is associated with 26294 variant alleles and maps to 513 oligo probes.

Gene

This transcript is a product of gene ENSG00000176438.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000334258.5	SYNE3-005	3275	975aa	ENSP00000334308.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9935	Q6ZMZ3	NM_152592.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000557275.1	SYNE3-001	3138	970aa	ENSP00000450562.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6ZMZ3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000554873.1	SYNE3-004	2826	732aa	ENSP00000452154.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V533	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000553340.1	SYNE3-003	2615	596aa	ENSP00000450774.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6ZMZ3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555759.1	SYNE3-002	5493	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 3,275 bps, Translation length: 975 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6ZMZ3

CCDS

This transcript is a member of the Human CCDS set: CCDS9935

Version

ENST00000334258.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000420529 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000334258.5 SYNE3-005

Summary