Transcript: ENST00000531322.1 CHST1-002

Description

carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 [Source:HGNC Symbol;Acc:1969]

Gene Synonyms

C6ST, GST-1, KS6ST, KSGal6ST, KSST

Location

About this transcript

This transcript has 3 exons, is associated with 5949 variant alleles and maps to 159 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000308064.2	CHST1-001	2718	411aa	ENSP00000309270.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7913	O43916	NM_003654.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000533673.1	CHST1-003	516	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000531322.1	CHST1-002	1361	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,361 bps,

Version

ENST00000531322.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000390129 (version 1)